Index A | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T A aerosol atom C chromatogram collision-induced dissociation (CID) consensus feature consensus map D de novo peptide sequencing E electrospray ionization (ESI) F FASTA format feature feature map G Galaxy H HPLC-MS I ion iTRAQ K KNIME L LC-MS Liquid chromatography LuciphorAdapter M m/z Mascot Mass mass spectrometry mass spectrum MS MS(1) MS(2) MS/MS MS^2 MS^3 MSExperiment MSGFPlusAdapter mzData mzML mzXML N Nextflow Nightly Snapshot O octadecyl (C18) OpenMS API orbitrap analyzers P peak PepNovo peptides proteins proteomics ProteoWizard pyOpenMS Q quadrupole mass filters R retention time RT S SILAC spectra SRM SWATH T time-of-flight (TOF) TMT TOPP TOPP tool TOPP Tools TOPPAS TOPPView