Hide navigation sidebar

Hide table of contents sidebar

Toggle site navigation sidebar

OpenMS 3.0.0 documentation

Toggle table of contents sidebar

OpenMS 3.0.0 documentation

Introduction

What is OpenMS?
Background
Entry Points to OpenMS

OpenMS Applications and Tools

Installation
Toggle navigation of Installation
- GNU/Linux
- macOS
- Windows
OpenMS Graphical User Interfaces
TOPP Tools
Toggle navigation of TOPP Tools
- Introduction to TOPP
- Types of TOPP Tools
UTILS Tools
Command Line Interface
TOPPView: Visualize with OpenMS
Toggle navigation of TOPPView: Visualize with OpenMS

Run Workflows with OpenMS Tools

Recommended Workflow Systems
OpenMS in KNIME
Toggle navigation of OpenMS in KNIME
OpenMS in Nextflow
Toggle navigation of OpenMS in Nextflow
OpenMS on Galaxy

Tutorials and Quick Start Guides

User Quickstart Guide
OpenMS User Tutorial
Worked Examples: Different OpenMS Methods to Achieve the Same Outcome

Develop with OpenMS

OpenMS C++ Core Library
OpenMS API Reference
pyOpenMS
Build From Source
External Code using OpenMS
Developer Tutorial

Contribute to OpenMS

Contributor’s Quick Start Guide
OpenMS Git Workflow
Write and Label GitHub Issues
Adding New Tool to The TOPP suite
Pull Request Checklist
Reporting Bugs and Issues
Advanced
Toggle navigation of Advanced

Downloads

OpenMS Installers
Workflows
OpenMS Releases
Other Resources

Quick Reference

Contributor FAQ
Developer FAQ
Contact Us
OpenMS Glossary

v: latest

Versions: latest; staging

Downloads: pdf; html

On Read the Docs: Project Home; Builds

Toggle table of contents sidebar

Ready-made OpenMS nextflow workflows#

Installation of nextflow and nf-core

Copyright © 2023, OpenMS Team

Made with Sphinx and @pradyunsg's Furo