OpenMS Installers#

Platform

Name

SHA256 Hash

Windows

OpenMS-2.7.0-Win64.exe

d203985c7042b885ac1085c30a2d9f36d7609b47

macOS

OpenMS-2.8.0-macOS.dmg

d203985c7042b885ac1085c30a2d9f36d7609b47

GNU/Linux

OpenMS-2.8.0-Debian-Linux-x86_64.deb

d203985c7042b885ac1085c30a2d9f36d7609b47

Source

OpenMS-2.8.0-src.tar.gz

d203985c7042b885ac1085c30a2d9f36d7609b47

Workflows#

Workflow

Description

Download Link

ProteomicsLFQ_tool_and_MSstats_postprocessing

Label-free identification and quantification using the comet search engine, the ProteomicsLFQ tool and statistical down-stream processing using MSstats. Compared to the other proteomics LFQ workflows, it is less complex as it combines quantification and inference steps in a single ProtemicLFQ tool.

Download

DIAMetAlyzer

Metabolomics assay library construction with decoy generation from DDA data and targeted DIA analysis using OpenSWATH and pyprophet for statistical validation.

Download

Identification_quantification_with_inference_isobaric_epifany_MSstatsTMT

Identification and quantification for isobaric experiments using MSGFPlus as search engine, epifany for inference and MSstatsTMT for statistical down-stream analysis.

Download

labelfree_with_protein_quantification

Label-free with protein quantification steps implemented using individual OpenMS tools

Download

Metabolite_Adduct_Grouping

Quantification and identification via accurate mass based on multiple adduct grouping steps (adducts, neutral losses).

Download

Metabolite_DeNovoID

Quantification and identification via adduct grouping and de-novo identification using SIRIUS/CSI:FingerID.

Download

Metabolite_ID

Quantification and identification via accurate mass based with downstream processing and visualisation.

Download

Metabolite_SpectralID

Identification via spectral library search for small molecules.

Download

MSstats_statPostProcessing_iPRG2015

Post processing workflow for using MSstats based on “Example_OneTool_ProteomicsLFQ_MSstats.knwf”

Download

MSstatsTMT

Post processing workflow for using MSstatsTMT based on “Identification_quantification_with_inference_isobaric_epifany_MSstatsTMT”.

Download

OpenSWATH

Targeted extraction and scoring of transitions in DIA data based on an (iRT) assay library.

Download

Phosphoproteomics_ID

Identification of Phosphorilation sites.

Download

OpenMS Releases#

Release

Installers

Stable release

Archive Link

Release candidates

Archive Link

Nightly release

Archive Link

Other Resources#

Name

Description

Download Link

Schemas

Documented schemas of the OpenMS formats

Download

iPRG2016 data

Dataset mxMLs, Fasta database, Identification file (idXML), Big Data (idXML)

Download